Tophat option -p
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9.4 years ago
akivab2 ▴ 110

Hi,

It is my first time running Tophat and I am trying to figure out its different options.

specifically the "-p" option. There is not much explained about it in the official Tophat manual.

additionally, does anyone know of a good tutorial or manual for Tophat?

Thanks

tophat rna-seq • 2.2k views
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9.4 years ago
Manvendra Singh ★ 2.2k
It's the number of cores on which you want to run your tophat command , e.g number of cpu or threads for the memory , -p has nothing to do with tophat algorithm, it's just allocation of memory
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thanks for the super quick answer

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Best tutorial is on the website of tophat, just click manual
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