Question: Append gene annotation to cuffdiff output
1
gravatar for chan1157
5.7 years ago by
chan115710
United States
chan115710 wrote:

Hi,

I have cuffdiff outputs and want to add gene annotation to them.

Is there a program can help me with this? I attached the two files, cuffdiff output and gene annotation.

Cuffmerge?Cuffcompare?

 

The gene annotation file I have is a .txt file form apple.

 

Thank you,

HY

rna-seq • 1.3k views
ADD COMMENTlink modified 5.7 years ago by Renesh1.9k • written 5.7 years ago by chan115710
0
gravatar for Renesh
5.7 years ago by
Renesh1.9k
United States
Renesh1.9k wrote:

You can easily do this with MySQL database. Upload the both cuffdiff output table and annotation table in MySQL and left join it based on the same id in both table.

ADD COMMENTlink written 5.7 years ago by Renesh1.9k
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