Question: SNP data analysis
gravatar for itigupta24
4.3 years ago by
itigupta240 wrote:

I have list of genes and their SNP's associated for a particular disease. I have 3 questions:

1) In my list i am pretty sure that 2 genes occur by different names. how can i stick to only one gene name so that same gene is not repeated twice in my list?? many of them are basically HLA region based in which the nomenclature is like HLA-DRB1*3 and for some position is mentioned like: 12Q13.2?? how can i remove such ambiguity?

2) I have a list of rs id's associated with a particular disease. What all type of analysis could be done from just rs id's apart from network analysis?

3) related to a particular disease what all in-silico analysis could be done to reach the sure shot genetic markers for that particular disease?

snp genome • 1.4k views
ADD COMMENTlink modified 4.3 years ago by RamRS22k • written 4.3 years ago by itigupta240

For #1, write a quick script that queries NCBI or UCSC for their positions. Their GenBank records should have a feature with the chromosomal location information.

ADD REPLYlink written 4.3 years ago by RamRS22k
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