Question: Error while running PSI-PRED
gravatar for sendambuj
4.1 years ago by
United States
sendambuj0 wrote:

I am trying to run psipred on my local computer. I got following error while running the program. 


hostid: Command not found.
Running PSI-BLAST with sequence example/example.fasta ...
Bus error
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.
Query= PDB|1FX1 FLAVODOXIN Sequence from PDB ATOM records
         (147 letters)
Database: uniref90filt 
           22,127,865 sequences; 7,415,084,932 total letters
SearchingFATAL: Error whilst running blastpgp - script terminated!

Can someone help me figure the root cause if this issue. Thanx in advance.



blastpgp psipred • 1.1k views
ADD COMMENTlink modified 4.1 years ago by RamRS20k • written 4.1 years ago by sendambuj0

What was the command you executed? And was this all of the error message you saw?

ADD REPLYlink written 4.1 years ago by RamRS20k
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