Question: Protein structure distorted after energy minimization using GROMACS
2
gravatar for BI
3.0 years ago by
BI60
India
BI60 wrote:

I have generated one protein structure from phyre2 using intensive mode. I tried to energy minimize it using GROMACS but unfortunately the resulting structure is completely distorted.  Is there any way I can fix this problem? I appreciate your help on this.

 

energy minimization • 1.4k views
ADD COMMENTlink modified 3.0 years ago by venu4.8k • written 3.0 years ago by BI60
3
gravatar for venu
3.0 years ago by
venu4.8k
Germany
venu4.8k wrote:

The information you have provided is very insufficient for any one to answer this or fix this problem. Possibly this might be a consequence of high temperature. Do the energy minimization with low temperature than the initial, then compare the result.

ADD COMMENTlink written 3.0 years ago by venu4.8k
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