Question: Protein structure distorted after energy minimization using GROMACS
gravatar for BI
5.6 years ago by
BI70 wrote:

I have generated one protein structure from phyre2 using intensive mode. I tried to energy minimize it using GROMACS but unfortunately the resulting structure is completely distorted.  Is there any way I can fix this problem? I appreciate your help on this.


energy minimization • 2.3k views
ADD COMMENTlink modified 5.6 years ago by venu6.7k • written 5.6 years ago by BI70
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5.6 years ago by
venu6.7k wrote:

The information you have provided is very insufficient for any one to answer this or fix this problem. Possibly this might be a consequence of high temperature. Do the energy minimization with low temperature than the initial, then compare the result.

ADD COMMENTlink written 5.6 years ago by venu6.7k
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