I am a new user of HEX and I have some confusions regarding the analysis of HEX docking results.
Can anyone please explain to me what does RMS represents and is it the same as RMSD? If not how can I calculate RMSD of HEX docking results? The results I got from HEX (online server) protein-protein docking is giving an RMS of -1.00, what does it mean?
Your kind help would be highly appreciated.