downloading cds from ensembl biomart
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9.1 years ago

I want to download a cds sequence database from ensembl from biomart, but every time I encounter a time out

Can anyone tell me how to achieve this. The specs are

database: ensembl gene 78

dataset : mus musculus genes

attributes: sequenes > coding sequence

header: Ensembl Gene ID, Ensembl Transcript ID, coding sequence

ensembl biomart cds • 2.8k views
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Entering edit mode
9.1 years ago
Emily 23k

You don't need to use BioMart for this, the data is on the FTP site.

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