Hello all, I want to use the fpfilter.pl script by the makers of VarScan2 and SomaticSniper to filter my variants, but first I need to run another analysis on the bam file using bam-reacount.
I'm having trouble installing bam-readcount because I don't have sudo access. I have installed things locally before but never have I tried something so complicated with so many steps.
I've googled and gotten pretty confused about the issue.
I'm still stuck at installing the dependencies. I tried:
dkpg -i --force-not--root --root=$HOME/tools build-essential git-core cmake zlib1g-dev libncurses-dev
But I get an invalid syntax warning about a python script.
Can anyone help me install bam-readcount without sudo access so I can use the fpfilter.pl script?
Thanks very much,