Question: How can i calculate D value from D' and R sqaure?
0
gravatar for mandecent.gupta
6.0 years ago by
United States
mandecent.gupta0 wrote:

Hi,

I have data file generated after using SNAP(http://www.broadinstitute.org/mpg/snap/ldsearchpw.php)

SNP    Proxy    Distance    RSquared    DPrime    Arrays    Chromosome    Coordinate_HG18    GeneVariant    GeneName    GeneDescription    Major    Minor    MAF    NObserved

rs9627183    rs9627183    0    1.000    1.000    AN,A5,A6,AxM,E1,E11,O5E,OEE,AAE    chr22    46663178    INTERGENIC    N/A    N/A    G    A    0.050    120
rs9627183    rs80226347    172    0.826    1.000    None    chr22    46663350    N/A    N/A    N/A    C    T    0.042    120

How can i calculate D from Rsqare and Dprime as this is needed for my calculation? 

Thanks

 

snp forum • 917 views
ADD COMMENTlink modified 6.0 years ago by Michael Dondrup48k • written 6.0 years ago by mandecent.gupta0
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