I'm looking at the DEL.bam file from the DELLY tests:
Its header is just two lines, and does not appear to give any indication of the reference genome it was aligned against:
@SQ SN:chr16 LN:10000000 @PG ID:bwa PN:bwa VN:0.6.1-r104
I am trying to figure out which reference genome it is aligned against. Anyone know of a way to do this?