Question: bam-readcount install error
gravatar for atkins.jackie
5.6 years ago by
United States
atkins.jackie0 wrote:

I am attempting to install bam-readcount on SLES 11.  I am using cmake 2.8 and gcc 4.8.3.

When I attempt to run make, I get the following:


BasicStat.cpp: In member function ‘void BasicStat::process_read(const bam_pileup1_t*)’:

/home/atkinja/installs/bam-readcount/src/lib/bamrc/BasicStat.cpp:101: error: cannot bind bitfield ‘((bam1_t*)base->bam_pileup1_t::b)->bam1_t::core.bam1_core_t::qual’ to ‘uint32_t&’

make[2]: *** [build/src/lib/bamrc/CMakeFiles/bamrc.dir/BasicStat.cpp.o] Error 1

make[1]: *** [build/src/lib/bamrc/CMakeFiles/bamrc.dir/all] Error 2

make: *** [all] Error 2


Any advice would be greatly appreciated!



bam-readcount software error • 1.3k views
ADD COMMENTlink written 5.6 years ago by atkins.jackie0

It's been a while so not sure if you ever got this to work. I can't replicate. What OS and compiler were you using?

ADD REPLYlink written 5.4 years ago by ernfrid210
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