Question: Finding pathways using Protein GI accession numbers
3
gravatar for HalSky
4.9 years ago by
HalSky30
Canada
HalSky30 wrote:

Hello,

I have a list of Protein GI accession numbers. I know that we can enter a list of gene names into REACTOME to obtain the related pathways. I would like to do this using Protein GI numbers only, on REACTOME and/or KEGGS, or it could be any other online database. Does anyone have an idea ?

Thanks

 

forum genome • 2.3k views
ADD COMMENTlink modified 4.8 years ago by verma30 • written 4.9 years ago by HalSky30

Hello ,

you can convert your Protein GI accession numbers to choice of IDs or IDs used in those programs using following below two links:

http://biodbnet.abcc.ncifcrf.gov/db/db2db.php#biodb

http://central.biomart.org/converter/#!/ID_converter/gene_ensembl_config_2

then converted IDs like Gene Names can used in Reactome or similiar kind of databases.

Hope it helps!

 

ADD REPLYlink written 4.9 years ago by vibes100200330
0
gravatar for verma
4.8 years ago by
verma30
India
verma30 wrote:

You can use Kegg (Kyoto Encyclopedia of genes and genomes) with protein GI accession numbers for comparative studies of your protein and also can obtain numerous related biological pathways within it. In addition, you can also use PharmGkb: https://www.pharmgkb.org/

Regards, 

Garima Verma.

ADD COMMENTlink written 4.8 years ago by verma30
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