Question: ID conversion tool: from RefSeq mRNA accessions to GO-biological process
0
gravatar for j-blanchard
5.4 years ago by
j-blanchard10
France
j-blanchard10 wrote:

Hi everyone,

I am studying genes under positive selection in several lineas. I would like to cluster genes under positive selection by biological process. I have the RefSeq mRNA accessions and I would like to acess  to the corresponding GO-biological process.

I found a website resource which do exactly what I want (bioDBnet). Nevertheless, I would like to introduce the id conversion in a pipeline in order to do the clustering automatically. As a consequence, I need either a id conversion tool or a liste of corresponding ID "RefSeq mRNA accessions <->GO terms".  

If anyone knows where I can find something like this, I will be very grateful.

 

 

 

go id conversion refseq • 2.4k views
ADD COMMENTlink modified 5.4 years ago • written 5.4 years ago by j-blanchard10
1
gravatar for Reema Singh
5.4 years ago by
Reema Singh150
United Kingdom
Reema Singh150 wrote:

See this How Do I Do Simple Go Term Lookup Given A Gene (Or Mrna) Identifier?. Also, try GO.db bioconductor package 

ADD COMMENTlink written 5.4 years ago by Reema Singh150

Thanks a lot, I didn't find that post. The biomaRt packages works well for what I want.

ADD REPLYlink written 5.4 years ago by j-blanchard10
1
gravatar for j-blanchard
5.4 years ago by
j-blanchard10
France
j-blanchard10 wrote:

If anyone is interested, I also find these conversion tables which were very useful for me : dbOrg

ADD COMMENTlink written 5.4 years ago by j-blanchard10
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