Hi everyone, i am using bioperl to do blast 2 sequence. I need to output as a tabular format. I saw some post where they mention we need to use -m8 to get tabular output. But in my code its not working. Can anyone help me out what i am missing in this code.
use Bio::Tools::Run::StandAloneBlastPlus; #use Excel::Writer::XLSX; use strict; use Bio::SearchIO; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new( -db_data =>'test.fasta', # Specifies the file to use for database -create =>1 # Creates a new temporary database ); my $result = $factory->blastn( -query =>'H1.fasta', # Specifies the query file -outfmt => -m8, -outfile =>'out_H1' # Specifies the output location ); $factory->cleanup; # Deletes the temporary database files