I am looking for some bioinformatics tools that can take some 1000 proteomes and predict aminoacid exposure to solvent from the protein sequence.
I know there are caveats, and that such prediction is hardly accurate, but still...
J. Cheng, A. Randall, M. Sweredoski, P. Baldi, SCRATCH: a Protein Structure and Structural Feature Prediction Server, Nucleic Acids Research, Web Server Issue vol. 33, 72-76, 2005
thank you very much!
if someone has other tools I'd appreciate it, as I'm running many many sequences and having other tools to compare may help
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