Hi dear all,
I am working with two ChIP-seq data, one is input control, the other is TF IP.
I have the data in Bedgraph. MACS2 can use bedgraph as input for peak calling.
I used bdgcmp parameter for comparing the input and TF IP bedgraph for peak calling.
However, the program return this error: ERROR :Invalid method: i
My code is : macs2 bdgcmp -c input.bedgraph -t TF_IP.bedgraph -o TF_IP_peak_out
Is anyone know what the problem is? How to solve it?
Thanks in advance!