Question: MACS2 bdgcmp for two bedgraph peak calling
0
gravatar for BIOTIN
4.6 years ago by
BIOTIN50
China
BIOTIN50 wrote:

Hi dear all,

 

I am working with two ChIP-seq data, one is input control, the other is TF IP.

I have the data in Bedgraph. MACS2 can use bedgraph as input for peak calling.

I used bdgcmp parameter for comparing the input and TF IP bedgraph for peak calling.

However, the program return this error: ERROR :Invalid method: i 

My code is : macs2 bdgcmp -c input.bedgraph -t TF_IP.bedgraph -o TF_IP_peak_out

Is anyone know what the problem is? How to solve it?

Thanks in advance!

ADD COMMENTlink modified 4.6 years ago • written 4.6 years ago by BIOTIN50
0
gravatar for BIOTIN
4.6 years ago by
BIOTIN50
China
BIOTIN50 wrote:

See:

https://github.com/taoliu/MACS/wiki/Build-Signal-Track

ADD COMMENTlink written 4.6 years ago by BIOTIN50
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