Where can I download NCI 60 data?
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9.3 years ago
zero_hsy ▴ 110

Hello

I am processing the data on NCI 60. However,what confuses me is that where can I download the NCI 60 data? I have not found a particular website where I can download the NCI 60.

It would be nice of you to answer my problem.

NCI60 • 7.8k views
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annovar has it in their database

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What I want is the following data:

1.gene expresion data

2.microRNA data

3.protein data

It would be nice of you to provide such data.Thanks!

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9.3 years ago
Noushin N ▴ 600

It looks to me that you can use the cellminer tool to select your data type of interest, and download. Hope this helps.

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You can select your data type of interest to download from here:

http://discover.nci.nih.gov/cellminer/loadDownload.do

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9.3 years ago
gtsueng ▴ 190

Not sure what kind of NCI60 data you're looking for, but http://biogps.org/downloads/ has gene expression data for NCI60 as well as info on the cells/tissues used in that Affymetrics array. If you're looking for just the cell lines, and some basic growing conditions, try here: http://dtp.nci.nih.gov/docs/misc/common_files/cell_list.html

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What I want is the following data:

  1. gene expression data
  2. microRNA data
  3. protein data

It would be nice of you to provide such data.Thanks!

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For affymetrics array data (gene expression), go here: http://biogps.org/downloads/ and it's the second row in the table.

For MicroRNA expression data, here: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26375

For protein data, the link above by Noushin N has it, select 'lysate array'

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Thanks very much! It is very nice of to let me ask another question.

What I forget to say is data on the drug-cell line result and the copy number on the NCI 60. Could you also provide the detailed url?

Thanks a lot !

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