Entering edit mode
9.1 years ago
Ruta
•
0
Hello,
As a beginner with WGCNA I'm using this tutorial for my data analysis.
In the section 2.b.4 Clustering using TOM
# Call the hierarchical clustering function
geneTree = hclust(as.dist(dissTOM), method = "average");
# Plot the resulting clustering tree (dendrogram)
sizeGrWindow(12,9)
plot(geneTree, xlab="", sub="", main = "Gene clustering on TOM-based dissimilarity",
labels = FALSE, hang = 0.04);
I'm not getting the right clusters on "Gene clustering on TOM−based dissimilarity"
My dendrogram looks like this:
I would really appreciate, if somebody could advice me what I could change in this hierarchical clustering.. or etc.?