Plink: How to run a quantitative TDT with haplotype window?
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9.1 years ago
jsolerga91 • 0

Dear readers,

I am trying to run a quantitative TDT with haplotypes with the PLINK programme. I am using the next commands:

  • qfam-total
  • mperm 10000
  • all-pheno
  • hap-window 1,2,3,4,5,6

However, the test works fine. However, in the results only appear the 6 SNPs individually, and there is not any haplotype. I would like to know if it is possible to run the same test (TDT) but taking into account all the possible haplotypes.

Thank you very much.

TDT plink haplotype • 2.3k views
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