I want to use a 16S (rRNA) sequence to find if there are any longer (fosmid) reads out there of this species or similar, in an environmental metagenomic context. Querying embl has turned up the 5 I know of though using keywords and filtering for long length.
Is anyone aware of such a database or how to query the common ones for fosmid size (ie >30,000) returns?
UPDATE: Sorry, didnt think! We are looking to see if there is any more homologous sequence data available for a candidate phylum that we have the 16S sequence for, but nothing else.
Which species or phyla in particular do you require? You did not specify this in the question.