Question: Command line blast atlas
1
gravatar for Lee Katz
3.9 years ago by
Lee Katz2.9k
Atlanta, GA
Lee Katz2.9k wrote:

Hi, what is the community's suggestions on blast atlas software?  I personally would like 

  1. Command line on Linux
  2. Batching/scalable (not point & click for 100 genomes)
  3. Integration with a standardized viewer, e.g., GView, or creates a PDF or PS at the end
  4. Not a virtual machine

The ones I know about are either a web page interface, GUI (too much point/click), or a virtual machine.  Basically, how do I cram 100 bacterial genomes into a blast atlas easily?  Thank you!

batch blast atlas command line • 1.2k views
ADD COMMENTlink modified 6 months ago by ropolocan500 • written 3.9 years ago by Lee Katz2.9k

Bumping this to the top, as it was probably not seen over the weekend

ADD REPLYlink written 3.9 years ago by Lee Katz2.9k
0
gravatar for ropolocan
6 months ago by
ropolocan500
Canada
ropolocan500 wrote:

Hi @Lee Katz. Have you found software to do this? Thanks!

ADD COMMENTlink written 6 months ago by ropolocan500
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