DiscoSNP++ is a reference-free SNP/indel discovery tool.
From version 2.1.2:
1/ discoSnp++ generates a VCF as output:
- Without mapping positions if no reference genome is available
- With mapping positions else. In this latter case, discoSnp++ uses bwa for mapping.
2/ discoSnp++ computes genotypes from predicted coverages of variants. This predictions are reported both in the fasta output and in the VCF file.
As usual any comment or feedback (negative or positive :)) is welcome.