Question: end of chromosome in .bed format
0
gravatar for carlin.daniel
5.2 years ago by
United States
carlin.daniel0 wrote:

Is there a way to specify the end of a chromosome in a .bed file without knowing how long each one is?

file format bed • 1.3k views
ADD COMMENTlink modified 5.2 years ago by Alex Reynolds30k • written 5.2 years ago by carlin.daniel0
0
gravatar for Devon Ryan
5.2 years ago by
Devon Ryan95k
Freiburg, Germany
Devon Ryan95k wrote:

No, there's not, at least in general.

ADD COMMENTlink written 5.2 years ago by Devon Ryan95k
3

.... but you can get the length from fetchChromSizes <genome>, e.g.:

fetchChromSizes hg19 > output_file

 

ADD REPLYlink written 5.2 years ago by Saulius Lukauskas530
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