Question: end of chromosome in .bed format
gravatar for carlin.daniel
5.8 years ago by
United States
carlin.daniel0 wrote:

Is there a way to specify the end of a chromosome in a .bed file without knowing how long each one is?

file format bed • 1.4k views
ADD COMMENTlink modified 5.8 years ago by Alex Reynolds31k • written 5.8 years ago by carlin.daniel0
gravatar for Devon Ryan
5.8 years ago by
Devon Ryan98k
Freiburg, Germany
Devon Ryan98k wrote:

No, there's not, at least in general.

ADD COMMENTlink written 5.8 years ago by Devon Ryan98k

.... but you can get the length from fetchChromSizes <genome>, e.g.:

fetchChromSizes hg19 > output_file


ADD REPLYlink written 5.8 years ago by Saulius Lukauskas530
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