Question: How to generate pair-wise alignments for all the orthologous gene pairs at once?
gravatar for kashiff007
5.7 years ago by
kashiff007130 wrote:

Hi everyone,

I want to calculate Ka/Ks value between two organism. For this I have to align pairwise each orthologs. I can align one pair at a time but I need to know how to align each pair at once. I have tabulated blast output which have the headers of each pair.

Please help me for this.

blast sequence alignment • 1.3k views
ADD COMMENTlink written 5.7 years ago by kashiff007130

Please show an example of how your data look like.

ADD REPLYlink written 5.7 years ago by Biomonika (Noolean)3.1k
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