Question: tumor sample SNP6 copy number calling
gravatar for Zhenyu Zhang
4.5 years ago by
Zhenyu Zhang260
United States
Zhenyu Zhang260 wrote:


We are planing to call copy numbers from SNP6 array from tumor and normal samples.  I know there are many tools normal sample genotyping.  However, what's the best practice for tumor sample CNA calling? 

Btw, I know that TCGA used GenePattern workflow from Broad.  Broad also have some other tools such as birdsuite.  


snp copy number tumor snp6 cna • 1.4k views
ADD COMMENTlink modified 4.5 years ago by Pierre Lindenbaum122k • written 4.5 years ago by Zhenyu Zhang260
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