Human genome gap file

Question

[win]

Hi there,

I am trying to work with mrCaNaVar (http://mrcanavar.sourceforge.net/) and it requires gapped files for the genome. I was wondering is someone knows where to generate a gapped file for genomes.

Thanks in advance.

Answer 1

[Chris Miller]

I assume you're talking about gaps in the reference genome. One such track is available via the UCSC table browser (https://genome.ucsc.edu/cgi-bin/hgTables?command=start) under "Mapping and Sequencing", track: Gap