Question: Downloading SRA/fastq files using NCBI variables
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gravatar for moranr
4.4 years ago by
moranr250
Ireland
moranr250 wrote:

Hi, 

I have a big table for >100 genomes with species having the following info: 

e.g.

#Organism/Name TaxID BioProject Accession BioProject ID Group SubGroup Size (Mb) GC% Assembly Accession Chromosomes Organelles Plasmids WGS Scaffolds Genes Proteins Release Date Modify Date Status Center BioSample Accession
Acanthisitta chloris 57068 PRJNA212877 212877 Animals Birds 1035.88 41.6 GCA_000695815.1 - - - JJRS01 53875 11365 9751 06/05/2014 05/09/2014 Scaffold BGI SAMN02318032

I would like to get an SRA file/ID so I can download the specific reads for the assembly that was used. 

Is there a way of doing this using E-utils ?

Thanks

data rna-seq python ncbi • 1.6k views
ADD COMMENTlink written 4.4 years ago by moranr250
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