I am processing the NCI 60 data. And I have known that the paper called "Global Proteome Analysis of the NCI-60 Cell Line Panel" gives the oroteome analysis. And I downloaded the data mentioned in the paper(ulr is http://188.8.131.52:7070/NCI60/).
What I exactly want is the protein expression data. The format is like the gene expression data. In detail, it is like this.
protein_1 ****** ***
protein_1 *** *****
However, when I go to the download page(http://184.108.40.206:7070/NCI60/main/download), the processed data is called "MaxQuant Output Files". When I download it, there are a lot of txt with different names.But it does not include the above data format.
Could anyone using the MaxQuant software tell me how to find the above data format? If there are not such data, what is the purpose of MaxQuant?