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9.0 years ago
cloud15
•
0
How to run PLINK --assoc for bacteria isolates in each lineage with high or low transmissibility information.
The *.fam
file in the format :
Lineage (single) mapping - 0 -9
Lineage (single) mapping - 0 -9
Generated bed,bim,fam,map with the option missing phenotype
I have the lineage specific *.vcf files (for high and low transmissible) ,snp for each lineage and its gene details.
Any advice would be great.
Thanks