how the pipeline for analysing whole genome of bacteria looks like?

Question

[Mo]

Hello,

Actually I would like to have a big picture of what a pipeline for whole genome of bacteria is!

This helps me to better understand the steps one can follow and what needs to be improved

If you are also aware of any good paper related, you can post it here too please.

Thanks

Answer 1

[HG]

Please have a look

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042304

http://genomebiology.com/2013/14/1/r2

http://www.biomedcentral.com/1471-2105/15/126

Hope you will get an idea.