Question: CCLE normalized/processed RNA-seq data
1
gravatar for BIOTIN
4.2 years ago by
BIOTIN50
China
BIOTIN50 wrote:

Dear all,

Is there any way to find/download CCLE normalized/processed RNA-seq in RPKM/FPKM/RSEM format? I know that this website(https://browser.cghub.ucsc.edu/) contains raw RNA-seq data.

Thanks in advances!

rna-seq cancer cell lines • 4.2k views
ADD COMMENTlink modified 13 months ago by Biostar ♦♦ 20 • written 4.2 years ago by BIOTIN50

this is actually a very good question! I would need the exact same thing but couldn't find it so far... let me know if you found a solution!

ADD REPLYlink written 3.9 years ago by leshaker0

I'm interested in this as well.  Please let me know if you found a solution.  Thanks!
 

ADD REPLYlink written 3.9 years ago by gspeyer0

I am not able to download Raw Data and this website is taking to GDC portal. Is their a way to download CCLE Raw data from GDC portal as well ?

ADD REPLYlink written 2.8 years ago by always_learning970
0
gravatar for snow.wu
2.3 years ago by
snow.wu0
indianapolis
snow.wu0 wrote:

I was able to access the bam files in GDC legacy archive. For the processed data, you can download it from Expression Atlas (EMBL-EBI)http://www.ebi.ac.uk/gxa/experiments/E-MTAB-2770

ADD COMMENTlink written 2.3 years ago by snow.wu0
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