Mouse SNP Array Copy Number Profiling
0
0
Entering edit mode
6.6 years ago
Noushin N ▴ 590

I am planning to run an experiment involving copy number profiling of a set of mouse tumor samples. We are planning to use Affymetrix's Mouse Diversity Genotyping array.

I can see that a dedicated R package (MouseDivGeno) supports this array can provide a set of preliminary calls (del/neutral/amp), as well as providing input to PennCNV. Unfortunately, I cannot find estimates for the range of tumor purity (or normal contamination) that the above tools could handle. I was wondering if anyone can share their experience here.

Any thoughts/comments would be appreciated!

 

mouse SNP copynumber • 1.7k views
ADD COMMENT

Login before adding your answer.

Traffic: 2330 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6