Entering edit mode
9.0 years ago
Vasu
▴
770
Hello,
I have been using the cuffdiff code to compare my groups to find differentially expressed genes, It went well with the samples but I want to do with groups and I got the following error.
cuffdiff \
-o diff_out2 \
-b ../genome/ce10.fa \
-p 3 \
-L SRR493359,SRR493360,SRR493361 SRR493363,SRR493364,SRR493365 \
-u ../cufflinks/merged_asm/merged.gtf SRR493359_thout/accepted_hits.bam,SRR493360_thout/accepted_hits.bam,SRR493361_thout/accepted_hits.bam SRR493363_thout/accepted_hits.bam,SRR493364_thout/accepted_hits.bam,SRR493365_thout/accepted_hits.bam
It returns with the error
Error: number of labels must match number of conditions
Please help me. Thank you!