Question: have anybody used DOSE package in R ??
0
gravatar for jaichandpatel2
4.7 years ago by
India/Delhi/DIPAS-DRDO
jaichandpatel210 wrote:

>computeIC(ont = "DO", organism = "human")
Error: could not find function "computeIC"
 

>cnetplot.internal(x, showCategory=5, categorySize="geneNum", foldChange=NULL, fixed=TRUE)
Error: could not find function "cnetplot.internal"

should i need of any other package ???

ADD COMMENTlink modified 4.7 years ago by Guangchuang Yu2.3k • written 4.7 years ago by jaichandpatel210
2

library(DOSE)?

ADD REPLYlink modified 4.7 years ago • written 4.7 years ago by PoGibas4.8k

yeah i am using library(DOSE)

ADD REPLYlink written 4.7 years ago by jaichandpatel210
1
gravatar for Guangchuang Yu
4.7 years ago by
Guangchuang Yu2.3k
China/Guangzhou/Southern Medical University
Guangchuang Yu2.3k wrote:

these are un-exported functions, that means they are not exposed to user.

 

ADD COMMENTlink written 4.7 years ago by Guangchuang Yu2.3k
1

To add, if your _really_ want to use these functions you can use the namespace for the library + triple colons:  `DOSE:::cnetplot.internal(...)`. BUT non-exported functions are not documented (so might not do exactly what you think they will) and may well change in the future. It's generally not a good idea to use such functions in your own code. (If there is something you can't do with the exported functions, maybe ask Guangchuang if he can add a user-exposed function for that task)

ADD REPLYlink written 4.7 years ago by David W4.7k
0
gravatar for Guangchuang Yu
4.7 years ago by
Guangchuang Yu2.3k
China/Guangzhou/Southern Medical University
Guangchuang Yu2.3k wrote:

all exported functions can be found here: https://github.com/GuangchuangYu/DOSE/blob/master/NAMESPACE

 

ADD COMMENTlink written 4.7 years ago by Guangchuang Yu2.3k
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