Post Genome Assembly
I am having single end reads from Ion Torrent. I assembled the reads by de novo and obtained alot of contigs. May I know what is the recommended software to arrange the contigs into a scaffold?
There doesn't seem to be a publication available for this software yet, but I've found Medusa to be very useful:
It seems like many of the other scaffolding tools require paired-end reads or are designed for prokaryote genomes.
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