Entering edit mode
9.0 years ago
muvinika
▴
10
Hi all,
List some tools to find the position of exons in the cDNA sequence.
Also help me if any package available in R.
Hi all,
List some tools to find the position of exons in the cDNA sequence.
Also help me if any package available in R.
In human, if you have cDNA sequence in FASTA format, you can use BLAT available from UCSC to map your cDNAs against the genome. The exons will then be the various blocks of the alignments.
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It is not possible to find the exons in cDNA sequence without other information. What other information do you have or propose to use to get your answer?
what's your input ?
cDNA sequence
I think I'm going to leave biostars.org
You don't have, just by chance, the genome sequence,too? Just asking.
Yes from genome sequence. Sorry I am from computer science so only I could not able to answer clearly.
So, you have cDNA sequence AND the sequence for the chromosomes? What species are you working with?
Homo sapiens
Rather than creating separate answers, please respond with comments.