Question: (Closed) Bioconductor Geneplotter Installation Error
gravatar for Nicolas Rosewick
8.9 years ago by
Belgium, Brussels
Nicolas Rosewick9.0k wrote:

I've during the geneplotter (Bioconductor package) installation. I'm using R 2.14 on Linux Mint 9. I think the namespace is responsible for this but I don't know how to fix it ...

Here's the error :

> source("")
> biocLite("geneplotter")
BioC_mirror: ''
Using R version 2.14, BiocInstaller version 1.2.0.
Installing package(s) 'geneplotter'
Installing package(s) into ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
essai de l'URL ''
Content type 'application/x-gzip' length 1387616 bytes (1.3 Mb)
URL ouverte
downloaded 1.3 Mb

* installing *source* package ‘geneplotter’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : 
  undefined exports: .__C__file, .__C__connection
Erreur : le chargement a échoué
Exécution arrêtée
ERREUR : le chargement a échoué
* removing ‘/home/nicolas/R/x86_64-pc-linux-gnu-library/2.14/geneplotter’

The downloaded packages are in
Message d'avis :
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status

Thanks in advance,


R bioconductor error • 2.7k views
ADD COMMENTlink written 8.9 years ago by Nicolas Rosewick9.0k

See the answer to your SO post!

ADD REPLYlink written 8.9 years ago by Martin Morgan1.6k is the link for those who don't wish to hunt for it ;)

ADD REPLYlink modified 11 months ago by RamRS30k • written 8.9 years ago by Daniel Swan13k
Please log in to add an answer.
The thread is closed. No new answers may be added.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1667 users visited in the last hour