Question: genome coordinates for snps
gravatar for win
4.9 years ago by
win820 wrote:

hi all,

i have some rs# and i wanted to know how i could get genomic coordinates for a set of rs# on different assemblies such as hg19, hg18 etc.


snp • 2.5k views
ADD COMMENTlink modified 19 months ago by Biostar ♦♦ 20 • written 4.9 years ago by win820

You can query ucsc snp database. See this forum: Get Snp Position From A Python Interface.

Just change the assembly names to your assemblies of interest and query using rs#. 

ADD REPLYlink written 4.9 years ago by Ashutosh Pandey12k
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