Question

What program can I use for multi-layered presentation of a biological network?

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9.8 years ago

dkarolid18 • 0

I have created a small database in Ecxel and I want to represent it as a network. I have been using Biolayout 3d but I really want to demonstrate the interactions through different layers, because my database includes interactions between genes, proteins, types of radiation, strains, dose rates and others... I have tried to download a program called Arena 3d but it doesn't work. Any ideas?? Thank you!

gene • 2.0k views

ADD COMMENT • link updated 3.1 years ago by Ram 43k • written 9.8 years ago by dkarolid18 • 0

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ADD REPLY • link updated 3.1 years ago by Ram 43k • written 9.8 years ago by Pierre Lindenbaum 161k

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Thank you for the responce, but I don't think R will help me with create a 3-D network visualization... I already have R studio and use it for cross-checking databases....

ADD REPLY • link updated 3.1 years ago by Ram 43k • written 9.8 years ago by dkarolid18 • 0

Ram · Answer 1 · 2015-04-13

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9.0 years ago

thorerges ▴ 70

I think you should take a look at Cytoscape. It is the most staightforward to use.

ADD COMMENT • link updated 3.1 years ago by Ram 43k • written 9.0 years ago by thorerges ▴ 70