Question: PWM Scan For Toxoplasma gondii
0
gravatar for mercadocapote
4.7 years ago by
United States
mercadocapote0 wrote:

I want to find a PWM-motif that is present in promoter regions of Toxoplasma gondii. I basically want to see the presence of specific DNA sequence [PWM-motif] in the promoter region which I obtained using transcription factors (protein) - DNA interaction studies, Protein Binding Microarray [PBM].

 

What can you recommend? (Programs, Packages, Databases, Advice)

ADD COMMENTlink modified 4.7 years ago by Kamil2.0k • written 4.7 years ago by mercadocapote0
1
gravatar for Kamil
4.7 years ago by
Kamil2.0k
Boston
Kamil2.0k wrote:

Check out the MEME suite for software to scan sequences for PWM sites.

CISBP is a nice motif database, but none of the 219 TFs for Toxoplasma gondii seem to have high quality supporting evidence.

ADD COMMENTlink written 4.7 years ago by Kamil2.0k
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