tried Trinity for de novo assembly, but it requires java 1.7 :
kurban@kurban-X550VC:~/Desktop/Trinity$ ~/Downloads/trinityrnaseq-2.0.6/Trinity --seqType fq --left R1.fq --right R2.fq --CPU 3 --max_memory 3G Error, Trinity requires access to Java version 1.7. Currently installed version is: java version "1.8.0_40" Java(TM) SE Runtime Environment (build 1.8.0_40-b25) Java HotSpot(TM) 64-Bit Server VM (build 25.40-b25, mixed mode) kurban@kurban-X550VC:~/Desktop/Trinity$ rpm -qa jdk kurban@kurban-X550VC:~/Desktop/Trinity$ sudo rpm -qa jdk kurban@kurban-X550VC:~/Desktop/Trinity$
and i tried to remove my current version java fro several hours , now its almost dawn here, but i still could not remover it.
have anybody encountered it before. please give me some suggestions !!!