Question: how to plot chromosomal distribution of lncRNA
0
gravatar for dineshtripathy9658
4.1 years ago by
United States
dineshtripathy965810 wrote:

i want to know how the GC content calulations can be made easily for genome. and also how to plot chromosomal distribution of lncRNA
 

lncrna • 1.6k views
ADD COMMENTlink modified 4.1 years ago by Michael Dondrup46k • written 4.1 years ago by dineshtripathy965810

these are 2 questions. Please split them up and elaborate a little bit more what exactly the input and output should be.

ADD REPLYlink written 4.1 years ago by Ido Tamir5.0k

For GC content check this question: What Is The Gc-Content Across Different Human Chromosomes?

For lncRNAs - you can do this easily using ggplot. Check this answer: A: Plotting Density Of Snps On Chromosomes

ADD REPLYlink written 4.1 years ago by PoGibas4.8k
1
gravatar for Michael Dondrup
4.1 years ago by
Bergen, Norway
Michael Dondrup46k wrote:

Two questions, single answer: use a genome browser such as UCSC, GBrowse, JBrowse, Ensemble genome browser which are preferentially already available online and pre-loaded with lncRNA tracks for model organisms for your genome of interest. Which genome are you working with? For more information see: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?

PS: this question is almost a 'close' for duplicate.

 

ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by Michael Dondrup46k
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