Calculate pair-wise dissimilarity of DNA sequences in Python
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6.5 years ago
songzewei ▴ 10

Is there any available package in Python that can calculate dissimilarity between two DNA sequences using any alignment algorithm?

Thanks!

python DNA sequence similarity alignment • 2.3k views
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6.5 years ago
Ram 34k

Maybe find the similarity and use the complement?

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yes, but I would like to know if there is any library or script available out there.

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I guess you could use EMBOSS needle or water wrapped in BioPython: http://biopython.org/DIST/docs/_api_159/Bio.Emboss.Applications-module.html

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