Question: Calculate pair-wise dissimilarity of DNA sequences in Python
0
gravatar for songzewei
5.4 years ago by
songzewei10
United States
songzewei10 wrote:

Is there any available package in Python that can calculate dissimilarity between two DNA sequences using any alignment algorithm?

Thanks!

ADD COMMENTlink written 5.4 years ago by songzewei10
1
gravatar for RamRS
5.4 years ago by
RamRS30k
Baylor College of Medicine, Houston, TX
RamRS30k wrote:

Maybe find the similarity and use the complement?

ADD COMMENTlink written 5.4 years ago by RamRS30k

yes, but I would like to know if there is any library or script available out there.

ADD REPLYlink written 5.4 years ago by songzewei10

I guess you could use EMBOSS needle or water wrapped in BioPython: http://biopython.org/DIST/docs/_api_159/Bio.Emboss.Applications-module.html

ADD REPLYlink written 5.4 years ago by RamRS30k
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