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9.0 years ago
I've used APT to process the CEL files to generate the cross-marker normalized signal intensity data from Axiom Genome-wide Chicken Array (Affymetrix).
I've used this following command:
apt-probeset-genotype \
-c Axiom_GW_GT_Chicken.r1.cdf \
-a birdseed \
--read-models-birdseed Axiom_GW_GT_Chicken.r1.AxiomGT1.models \
--special-snps Axiom_GW_GT_Chicken.r1.specialSNPs \
--out-dir apt \
--cel-files animal.txt
When I ran this command, the program exited with a fatal error:
FATAL ERROR:Exception. msg: 'Missing required column: ' source file: 'PriorsReader.cpp:352'
Could someone help me to fix this problem?
Thanks