Entering edit mode
9.0 years ago
AHW
▴
90
I am new to R and codelink package.
I upload two sample files using
f = list.files(pattern = "TXT")
and get the expression and SNR intensity by running first
codset = readCodelinkSet(filename = f)
I get expression by
exprs(codset)
and SNR by
getSNR(codset)
However I failed to get the Probe ID. I think I am missing something down here
pdata = read.AnnotatedDataFrame("targets.txt")
codset = readCodelinkSet(filename = pdata$FileName, phenoData = pdata)
What is targets.txt
and how to prepare it? How to get probe IDs. Help appreciated