Parse aligned FASTA with SeqAn
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6.6 years ago
cyril.cyrov ▴ 10

Is it possible to parse an aligned (gaps filled with '-') FASTA file with SeqAn?

I tried using seqan::SeqFileIn, which didn't work, as expected (`SeqAn` exception is thrown: "Unexpected character '-' found.").

(I know it's not the best lib for parsing file formats, but I'll use the lib anyway and wanted to make this work)

parse aligned SeqAn fasta • 1.4k views
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