Entering edit mode
8.1 years ago
m_02 ▴ 20
I am using bingo app in cytoscape for a non model organism to calculate overrepresented GO terms in the network, I am using customize option where I made my own annotation and ontology files for the organism as it was instructed in the bingo tutorial.But when I click on start button nothing happens,no output is there.
annotation.anno) that I created is as follows:
(species=Brugia malayi)(type=Biological Process)(curator=GO) Bm1_00120 = 0015986 Bm1_00120 = 0000275 Bm1_00120 = 0046961 Bm1_00120 = 0046933 Bm1_00125 = 0003676 Bm1_00125 = 0008270 Bm1_00130 = 0005524 Bm1_00130 = 0004672 Bm1_00130 = 0006468
ontology.obo) that I created is as follows:
(curator=GO)(type=process) 0015986 = ATPsynthesiscoupledprotontransport 0000275 = mitochondrialproton-transportingATPsynthasecomplex,catalyticcoreF(1) 0046961 = proton-transportingATPaseactivity,rotationalmechanism 0046933 = proton-transportingATPsynthaseactivity,rotationalmechanism 0003676 = nucleicacidbinding 0008270 = zincionbinding 0005524 = ATPbinding
Can anyone help me with the files and tell me where I am going wrong?
Did anyone answer you?
Does not appear so since Biostars does not have a way to private message anyone on the forum.
Information about the file formats seems to be here.
Did this custom obo file works??