Question: Running splign just like NCBI
0
gravatar for Reece
3.6 years ago by
Reece250
United States
Reece250 wrote:

NCBI exposes (e.g., via eutils) genomic coordinates for current transcripts on the current assembly only. I would like coordinates for older transcript versions on newer assemblies and for newer transcripts on older assemblies, and be reasonably confident that I'm mimicking NCBI behavior as closely as possible.

Has anyone out there reproduced NCBI's invocation of splign? If so, how?

To be clear, I have splign and friends running. I'm really asking about the command line invocation and data prep.

 

splign alignment gnomon • 1.4k views
ADD COMMENTlink written 3.6 years ago by Reece250
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1087 users visited in the last hour