Question: how to merge contigs from two assemblers?
1
gravatar for div
4.1 years ago by
div60
Banglore
div60 wrote:

Hi everyone,

I am having single end reads from Ion Torrent. I also did my de novo assembly with Spades( SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing) , MIRA too  and also I am using CISa : Contig Merger (http://sb.nhri.org.tw/CISA/en/Instruction) for single end reads .

Now if i merge the contig file from both the program which program i can use for this job??

After merging the contig the quality of draft genome will increase or not ??

If any one have experience please help me out ..

Thank you advance

sequencing tool assembly genome • 1.4k views
ADD COMMENTlink modified 4.1 years ago by Sean Davis25k • written 4.1 years ago by div60
0
gravatar for orange
4.1 years ago by
orange30
Korea, Republic Of
orange30 wrote:

maybe you can try rabbit 

ADD COMMENTlink written 4.1 years ago by orange30
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