Question: genome music bmr cal-covg
gravatar for qwertyuiop201320142015
2.4 years ago by


        there is a question in my mind.i have the MAFv2.3 files and roi file ,but i do not know  how to generate the bam-list files which include tumour bam and normal bam.

       any help will be appreciate! thank you.



ADD COMMENTlink modified 2.3 years ago by michael.d.mclellan110 • written 2.4 years ago by qwertyuiop2013201420150
gravatar for Pascal
2.4 years ago by
European Union
Pascal230 wrote:

Not quite sure, but I think only the tumor bam is required. Format is 

ID<TAB>Another ID<TAB>path/to/Tumor.bam

ADD COMMENTlink written 2.4 years ago by Pascal230
gravatar for michael.d.mclellan
2.3 years ago by
United States
michael.d.mclellan110 wrote:

Check out



Provide a file containing sample names and normal/tumor BAM locations for each. Use the tab- delimited format [sample_name normal_bam tumor_bam] per line. Additional columns like clinical data are allowed, but ignored. The sample_name must be the same as the tumor sample names used in the MAF file (16th column, with the header Tumor_Sample_Barcode).

ADD COMMENTlink written 2.3 years ago by michael.d.mclellan110
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