Question: genome music bmr cal-covg
gravatar for qwertyuiop201320142015
5.6 years ago by


        there is a question in my mind.i have the MAFv2.3 files and roi file ,but i do not know  how to generate the bam-list files which include tumour bam and normal bam.

       any help will be appreciate! thank you.



music bmr cal-covg reference genome • 1.1k views
ADD COMMENTlink modified 5.5 years ago by michael.d.mclellan150 • written 5.6 years ago by qwertyuiop2013201420150
gravatar for Pascal
5.6 years ago by
European Union
Pascal250 wrote:

Not quite sure, but I think only the tumor bam is required. Format is 

ID<TAB>Another ID<TAB>path/to/Tumor.bam

ADD COMMENTlink written 5.6 years ago by Pascal250
gravatar for michael.d.mclellan
5.5 years ago by
United States
michael.d.mclellan150 wrote:

Check out



Provide a file containing sample names and normal/tumor BAM locations for each. Use the tab- delimited format [sample_name normal_bam tumor_bam] per line. Additional columns like clinical data are allowed, but ignored. The sample_name must be the same as the tumor sample names used in the MAF file (16th column, with the header Tumor_Sample_Barcode).

ADD COMMENTlink written 5.5 years ago by michael.d.mclellan150
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1497 users visited in the last hour